EMBOSS

| NUCLEIC 2D STRUCTURE

Nucleic acid secondary structure

Program name | Description
--- | ---
einverted | Finds inverted repeats in nucleotide sequences
vrnaalifold | RNA alignment folding
vrnaalifoldpf | RNA alignment folding with partition
vrnacofold | RNA cofolding
vrnacofoldconc | RNA cofolding with concentrations
vrnacofoldpf | RNA cofolding with partitioning
vrnadistance | RNA distances
vrnaduplex | RNA duplex calculation
vrnaeval | RNA eval
vrnaevalpair | RNA eval with cofold
vrnafold | Calculate secondary structures of RNAs
vrnafoldpf | Secondary structures of RNAs with partition
vrnaheat | RNA melting
vrnainverse | RNA sequences matching a structure
vrnalfold | Calculate locally stable secondary structures of RNAs
vrnaplot | Plot vrnafold output
vrnasubopt | Calculate RNA suboptimals