EMBOSS

| UTILS DATABASE CREATION

Database installation

Program name | Description
--- | ---
aaindexextract | Extract amino acid property data from AAINDEX
cutgextract | Extract codon usage tables from from CUTG database
jaspextract | Extract data from JASPAR
printsextract | Extract data from PRINTS database for use by pscan
prosextract | Processes the PROSITE motif database for use by patmatmotifs
rebaseextract | Process the REBASE database for use by restriction enzyme applications
tfextract | Process TRANSFAC transcription factor database for use by tfscan
cathparse | Generates DCF file from raw CATH files
domainnr | Removes redundant domains from a DCF file
domainseqs | Adds sequence records to a DCF file
domainsse | Add secondary structure records to a DCF file
scopparse | Generate DCF file from raw SCOP files
ssematch | Search a DCF file for secondary structure matches
allversusall | Sequence similarity data from all-versus-all comparison
seqnr | Removes redundancy from DHF files
domainer | Generates domain CCF files from protein CCF files
hetparse | Converts heterogen group dictionary to EMBL-like format
pdbparse | Parses PDB files and writes protein CCF files
pdbplus | Add accessibility & secondary structure to a CCF file
pdbtosp | Convert swissprot:PDB codes file to EMBL-like format
sites | Generate residue-ligand CON files from CCF files